These repositories contain solutions to TPs from my six years at ESI-SBA. While most solutions are my own, many friends and other students have contributed. I deeply appreciate their efforts and input ...

We develop algorithms and data structures for the analysis of genome-scale data. Such data is abundant due to modern molecular biology measurement techniques like high-throughput sequencing. We are ...

Professor Veli Mäkinen works in the areas of algorithmic bioinformatics and succinct data structures. Most recently prof. Mäkinen has focused on extending sequence analysis to different pan-genome ...

Research on algorithms embraces two fundamental goals: algorithm design and algorithm analysis. Algorithm analysis is concerned with predicting how well a given algorithm will perform in a given ...

Abstract: Write-optimized dictionaries (WODs), such as LSM trees and B^epsilon trees, are increasingly used in databases and file systems. Such data structures support very fast insertions without ...